PTM Viewer PTM Viewer

AT4G01310.1

Arabidopsis thaliana [ath]

Ribosomal L5P family protein

24 PTM sites : 9 PTM types

PLAZA: AT4G01310
Gene Family: HOM05D006032
Other Names: NULL

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nt V 40 VSASGTVLVEKSEAEKTQR96
nta V 40 VSASGTVLVEKSEAEKTQR96
nt S 41 SASGTVLVE99
nta S 41 SASGTVLVEKSEAEKTQR119
nt A 42 ASGTVLVE92
nt S 43 SGTVLVEKSEAEKTQRLKTAY167b
SGTVLVEKSEAEKTQR80
96
118
ub K 60 LKTAYLER40
ac K 72 IIPALKEEFK101
ac K 76 EEFKYVNIHQVPK98a
98e
sno C 93 IVVNCGIGDAAQNDK169
so C 93 IVVNCGIGDAAQNDK110
mox M 109 GLEAAMK62a
62b
ac K 119 DIALITGQKPIK101
ac K 122 DIALITGQKPIKTR101
nt E 136 EDQPLGIAVTLR119
ph S 173 DFQGVSPSSFDGNGNYSIGVK114
acy C 210 GMDVCISTTAK163d
sno C 210 GMDVCISTTAK169
so C 210 GMDVCISTTAK110
nt I 211 ISTTAKSDQE99
nt E 234 EGGGGSTGAIVR99
nta E 234 EGGGGSTGAIVR99
ph S 239 EGGGGSTGAIVR114
ac K 257 SHHFDAKGK98c

Sequence

Length: 262

MASPSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNVVKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGKR

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
ub Ubiquitination X
ac Acetylation X
sno S-nitrosylation X
so S-sulfenylation X
mox Methionine Oxidation X
ph Phosphorylation X
acy S-Acylation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR031309 139 232
IPR031310 79 135
Molecule Processing
Show Type From To
Transit Peptide 1 39

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here